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Prepare segmentation pipeline for new metadata #1690

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h-mayorquin merged 3 commits intomainfrom
segmentation_pipeline_new_format_support
Mar 10, 2026
Merged

Prepare segmentation pipeline for new metadata #1690
h-mayorquin merged 3 commits intomainfrom
segmentation_pipeline_new_format_support

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Related to: #1653

@h-mayorquin h-mayorquin marked this pull request as ready for review March 9, 2026 22:40
@h-mayorquin h-mayorquin merged commit 7413efe into main Mar 10, 2026
46 of 53 checks passed
@h-mayorquin h-mayorquin deleted the segmentation_pipeline_new_format_support branch March 10, 2026 17:27
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codecov bot commented Mar 10, 2026

Codecov Report

❌ Patch coverage is 94.08867% with 24 lines in your changes missing coverage. Please review.
✅ Project coverage is 80.87%. Comparing base (956eadb) to head (4f94a95).
⚠️ Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
...roiextractors/roiextractors_pending_deprecation.py 94.00% 24 Missing ⚠️
Additional details and impacted files

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@@            Coverage Diff             @@
##             main    #1690      +/-   ##
==========================================
+ Coverage   80.86%   80.87%   +0.01%     
==========================================
  Files         160      160              
  Lines       12585    12594       +9     
==========================================
+ Hits        10177    10186       +9     
  Misses       2408     2408              
Flag Coverage Δ
unittests 80.87% <94.08%> (+0.01%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
...rfaces/ophys/basesegmentationextractorinterface.py 80.00% <100.00%> (ø)
...tainterfaces/ophys/miniscope/miniscopeconverter.py 95.00% <100.00%> (ø)
...s/ophys/miniscope/miniscopeimagingdatainterface.py 77.91% <100.00%> (ø)
src/neuroconv/tools/roiextractors/__init__.py 100.00% <ø> (ø)
src/neuroconv/tools/roiextractors/roiextractors.py 48.47% <100.00%> (-27.11%) ⬇️
...roiextractors/roiextractors_pending_deprecation.py 93.71% <94.00%> (+6.21%) ⬆️
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